What we deliver

Bioinformatics services tailored to your discovery and development process

Genotope integrates and analyzes complex biological datasets using state-of-the-art analytical pipelines, including bespoke workflows developed for specific research needs.

Schedule a Consultation

Featured Capability

Single-cell & spatial multiomics analysis

Move beyond bulk sequencing. Genotope integrates and analyzes single-cell RNA-seq, ATAC-seq, and spatial transcriptomics datasets using state-of-the-art analytical pipelines and bespoke computational workflows tailored to specific research objectives. From raw FASTQ processing through advanced cellular characterization and trajectory analysis, we help extract meaningful biological insight from every cell.

  • scRNA-seq QC, normalization & clustering

  • ATAC-seq chromatin accessibility analysis

  • Trajectory & pseudotime analysis

  • Annotated Seurat/AnnData deliverables

  • Cell-type annotation against reference datasets

  • Spatial transcriptomics integration

  • Differential expression across conditions

  • Structured analytical reports

Training data architecture

AI/ML training data curation & integration

Building AI/ML models for biological applications requires structured, biologically meaningful training data — and that is rarely what comes out of the lab. Genotope cleans, harmonizes, annotates, and integrates multiomics and genomic datasets, transforming fragmented experimental and public data into structured, analysis-ready resources optimized for downstream AI/ML development, bioinformatics pipelines, and translational research.

  • Dataset cleaning, QC & harmonization

  • Public & proprietary dataset integration

  • Training/validation/test set structuring

  • Biological feature annotation

  • Ontology mapping & standardization

  • Legacy dataset rescue & reuse

Bespoke workflows for complex questions

Custom data analysis and pipelines

Standardized workflows are not always sufficient for complex biological questions. Genotope develops and adapts bespoke computational pipelines tailored to specific study objectives, data modalities, and organism models — while also leveraging proven public and commercial analytical frameworks where appropriate to maximize scientific rigor, efficiency, and reproducibility.

  • End-to-end pipeline design & implementation

  • Reproducible workflow documentation

  • R & Python-based analytical workflows

  • Multi-modal data integration

  • Cloud & HPC infrastructure support

  • Integration with established frameworks

Representative Experience

Engagements led by Genotope's founder

The following reflects work led by Genotope's founder and is representative of the expertise Genotope brings to client engagements.

Small Biopharma

Early Discovery

Computational Peptide Prioritization

A small biopharma company sought to rationally prioritize a library of peptide candidates ahead of costly in vitro and in vivo screening.

Learn More

Small Bioptech

Translational Research

Integrative epigenomic & transcriptomic analysis

A small biotech developing treatments in the neuromuscular space required integrated multi-omics analysis to identify novel gene targets of therapeutic interest.

Learn More

Large Biopharma

Clinical genomics

Clinical Genomics & Biomarker Analysis — Oncology

A global biopharma organization engaged the team to conduct integrated genomic analysis across multiple large-scale clinical trials in oncology.

Learn More

Small Biopharma

Single Cell

Single-Cell Transcriptomics & Immune Cell Profiling

A small biopharma organization required single-cell RNA-seq analysis to characterize immune cell populations and identify gene signatures across disease contexts.

Learn More

Computational Peptide Prioritization

A small biopharma company sought to rationally prioritize a library of peptide candidates ahead of costly in vitro and in vivo screening. The engagement involved structure-based computational modeling of candidate conformational fit against the target binding site on a defined oncology target protein. The analysis yielded a ranked candidate list with predicted binding properties, enabling the client to focus experimental resources on the most promising leads and accelerate entry into wet lab validation.

Let’s Schedule a Call

Integrative Epigenomic & Transcriptomic Analysis

A small biotech developing treatments in the neuromuscular space required integrated multi-omics analysis to identify novel gene targets of therapeutic interest. The engagement encompassed data QC and curation, differential gene expression and DNA methylation analysis across experimental groups, and integrative analysis correlating epigenomic and transcriptomic findings to prioritize candidates for further investigation. The engagement resulted in successful project delivery and expansion into additional contracts.

Let’s Schedule a Call

Clinical Genomics & Biomarker Analysis — Oncology

A global biopharma organization engaged the team to conduct integrated genomic analysis across multiple large-scale clinical trials in oncology. The work focused on identifying predictive gene signatures, characterizing long-term survivor populations, and elucidating mechanisms of action across key genomic subgroups. The engagement was structured as a dedicated multi-month analytical partnership.

Let’s Schedule a Call

Single-Cell Transcriptomics & Immune Cell Profiling

A small biopharma organization required single-cell RNA-seq analysis to characterize immune cell populations and identify gene signatures across disease contexts. The engagement encompassed cloud-based data infrastructure setup, single-cell QC and clustering, cell-type annotation against public reference datasets, and both hypothesis-driven and discovery-driven differential expression analysis across cell types, treatment conditions, and disease states. Deliverables included fully annotated Seurat objects, cluster optimization figures, and structured analytical reports suitable for downstream target identification and biomarker development.

Let’s Schedule a Call

Get Started

Let’s schedule a call

Whether you have a defined study or an early-stage analytical challenge, we'd like to hear about it.

Schedule a consultation

Contact Us Now

Contact Us to get started with your project

Schedule a Consultation
inquiries@genotope.com
Services
Single-cell & spatial multiomicsAI/ML training data identification and curationCustom bioinformatic analysis & pipelines
Company
About UsContact
Address

3120 Southwest Fwy
Ste 101 PMB 123414
Houston, TX 77098